Scaffold Ga0371488_0172354

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0371488_0172354

Scaffold Ga0371488_0172354

Overview

Basic Information
Taxon OID	3300033983 Open in IMG/M
Scaffold ID	Ga0371488_0172354 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1114
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: McLean, Ithaca, New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002376	Metagenome / Metatranscriptome	566	Y
F026055	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0371488_0172354_1_819	F002376	GGAG	MQVFGKLIRFAHKPTREKLQIVRSTVLAKLPEMEWYWKVHSPGNDRTAYIIGLFGTGRLYLNQLVQLHIGERAKYFRDTIRFHSGATSMIYSGHATVRHASRAQAPPDVTRRILEAVRSGFADLIFLYRHPLDSLLTNWVYWRMYLRGDMRIFVSFAYENTDDLCADLERNFIEFKLFADGDPGFFAAAPGPRFLSFREFVEETELHLQSATLAVKFEDFATDPAMEFSKIAGVMGINLDLSRLRVAPPNTKPYRHLEVKEKVPRFRDFIEGL
Ga0371488_0172354_846_1058	F026055	GAGG	MIDPSREFSKIARVMSVDLDLSSLHVDPPKTMPYRFLAVREKVPRFRNFIDGLDAETKRRIEKIGYTLGS

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